FastQCFastQC Report
週三 1 5月 2024
N_R1.trimmed.paired.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameN_R1.trimmed.paired.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17872430
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length33-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGG285660.15983277036194854No Hit
GGTGTATGCATCGGGGTAGTCCGAGTAACGTCGGGGCATTCCGGATAGGC234320.13110696195201213No Hit
GGATGACATAACTATTAGTGGCAGGTTAGTTGTTTGTAGGGCTCATGGTA233560.13068172598801617No Hit
GTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTGGGATTTTTTAGGTA218160.12206510250704578No Hit
GTTTGGTTTAGACGTCCGGGAATTGCATCTGTTTTTAAGCCTAATGTGGG204200.11425418927364661No Hit
GGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTCGTAC190990.10686291679419081No Hit
GTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTA189930.10626982452861754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)