VEP run statistics
| VEP version (API) | 104 (104) |
| Annotation sources | Cache: /CMU_TSA/joyce7625e5/TSA_tool/data/GRCh38.104_vep/homo_sapiens/104_GRCh38 |
| Species | homo_sapiens |
| Command line options | --buffer_size 1000 --dir_cache /CMU_TSA/joyce7625e5/TSA_tool/data//GRCh38.104_vep --dir_plugins /CMU_TSA/joyce7625e5/TSA_tool/data//iedb/VEP_plugins --fasta /CMU_TSA/joyce7625e5/TSA_tool/data//DNA_ref/ref/GRCh38.d1.vd1.fa --fork 48 --format vcf --hgvs --input_file /home/joyce7625e5/NARWHAL/tsa_tool/assets/file-uploads-temp/f8a97207312df3edde7e788440366c32fbd17985af8344f86c94d8ab7d9f9c96/mTSA_DNAseq/5-phasing/T/gatk/T.phased.vcf --offline --output_file /home/joyce7625e5/NARWHAL/tsa_tool/assets/file-uploads-temp/f8a97207312df3edde7e788440366c32fbd17985af8344f86c94d8ab7d9f9c96/mTSA_DNAseq/5-phasing/T/vep/T.phased.vep.vcf --plugin Frameshift --plugin Wildtype --show_ref_allele --symbol --terms SO --tsl --vcf |
| Start time | 2024-05-01 15:00:45 |
| End time | 2024-05-01 15:01:54 |
| Run time | 69 seconds |
| Input file | /home/joyce7625e5/NARWHAL/tsa_tool/assets/file-uploads-temp/f8a97207312df3edde7e788440366c32fbd17985af8344f86c94d8ab7d9f9c96/mTSA_DNAseq/5-phasing/T/gatk/T.phased.vcf |
| Output file | /home/joyce7625e5/NARWHAL/tsa_tool/assets/file-uploads-temp/f8a97207312df3edde7e788440366c32fbd17985af8344f86c94d8ab7d9f9c96/mTSA_DNAseq/5-phasing/T/vep/T.phased.vep.vcf |
General statistics
| Lines of input read | 41165 |
| Variants processed | 41165 |
| Variants filtered out | 0 |
| Novel / existing variants | - |
| Overlapped genes | 20080 |
| Overlapped transcripts | 112722 |
| Overlapped regulatory features | - |